Computing in Molecular Biology
MCB 432
University of Illinois at Urbana-Champaign
(http://www.life.uiuc.edu/mcb/432/)

World Wide Web Links

Some Sequence Analysis Resources

Molecular Biology
NCBI: Entrez: PubMed Protein Nucleotide Genome Structure Taxonomy
BLAST: BLASTN BLASTP BLASTX TBLASTN Psi-BLAST
ExPASy: SWISS-PROT PROSITE ENZYME 2D PAGE 3D Images MODEL Amos' Links
DBGET: Compound Reaction Enzyme Pathway Orthology Genome AAIndex
The SEED: Good U. Chicago
UCSD: Biology WorkBench

Genome Sequencing Project Lists

General

Entrez: Genome, National Center for Biotechnology Information
Complete Microbial Genomes
Eukaryotes
FungiĘGenome Projects
Plant Genomes Central
Viruses
Phages
Genome Project Database

BioMolecular Engineering Research Center, Boston University

COGENT: Complete Genome Tracking Database, Computational Genomics Group, EBI

Genomes at the EBI, European Bioinformatics Institute

Archaea
Bacteria
Eukaryota
Organelle
Virus
Phage

GOLD™: Genomes OnLine Database, Nikos Kyrpides et al. (Joint Genome Institute)

Quick Guide to Sequenced Genomes, Genome News Network, J. Craig Venter Institute

Projects at Some Genome Centers

Baylor College of Medicine

University of Washington Genome Center

JGI Genome Portal, The DOE Joint Genome Institute

JGI Microbial Genomics, The DOE Joint Genome Institute

Sequencing Genomics Projects, The Sanger Institute

TIGR Microbial Database, The Institute for Genomic Research

Washington University Genome Sequencing Center

Some Compilations of Links to Data, Services and Software

Gene recognition softwarewww.nslij-genetics.org/gene/
Phylogenetic analysis softwareevolution.genetics.washington.edu/phylip/software.html
Nucleic Acids Research Database Issue (2007)nar.oupjournals.org/content/vol35/suppl_1/
Nucleic Acids Research Database Compilationwww3.oup.co.uk/nar/database/c/
Nucleic Acids Research Web Server Issue (2006)nar.oupjournals.org/content/vol34/suppl_2/

Some Specific Data, Services and Software

The PHYLIP home pageŃJoe Felsenstein's Phylogenetic Inference Packageevolution.genetics.washington.edu/phylip.html
The American Type Culture Collection (ATCC): Information on collections, strains and mediawww.atcc.org
Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ): Information on collections, strains and mediawww.dsmz.de/index.html
Lists of bacterial names with standing in nomenclaturewww.dsmz.de/bactnom/bactname.htm
The Tree of Lifetolweb.org/tree/phylogeny.html
Library of Congress catalogscatalog.loc.gov
University of Illinois library catalog accesswww.library.uiuc.edu/catalog/
Oxford English Dictionary (UIUC use only)dictionary.oed.com/entrance.dtl
The U.S. Postal Service 9 digit zip codeswww.usps.gov/ncsc/lookups/lookup_zip+4.html
If you encounter errors or difficulties, please send E-mail to:
gary@life.uiuc.edu (Gary J. Olsen)
Be sure to provide the URL of the troublesome page(s).